Full text data of RBM48
RBM48
(C7orf64)
[Confidence: low (only semi-automatic identification from reviews)]
RNA-binding protein 48
Note: presumably soluble (membrane word is not in UniProt keywords or features)
RNA-binding protein 48
Note: presumably soluble (membrane word is not in UniProt keywords or features)
UniProt
Q5RL73
ID RBM48_HUMAN Reviewed; 367 AA.
AC Q5RL73; B7ZL51; Q5H9T2; Q8IYW7; Q96NS0; Q9H0V7;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
read moreDT 21-DEC-2004, sequence version 1.
DT 22-JAN-2014, entry version 83.
DE RecName: Full=RNA-binding protein 48;
GN Name=RBM48; Synonyms=C7orf64; ORFNames=HSPC304;
OS Homo sapiens (Human).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
OC Catarrhini; Hominidae; Homo.
OX NCBI_TaxID=9606;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Brain, and Endometrial adenocarcinoma;
RX PubMed=11230166; DOI=10.1101/gr.GR1547R;
RA Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S.,
RA Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H.,
RA Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N.,
RA Mewes H.-W., Ottenwaelder B., Obermaier B., Tampe J., Heubner D.,
RA Wambutt R., Korn B., Klein M., Poustka A.;
RT "Towards a catalog of human genes and proteins: sequencing and
RT analysis of 500 novel complete protein coding human cDNAs.";
RL Genome Res. 11:422-435(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
RA Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
RA Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
RA Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
RA Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
RA Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
RA Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
RA Venter J.C.;
RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Brain, Lung, and Testis;
RX PubMed=15489334; DOI=10.1101/gr.2596504;
RG The MGC Project Team;
RT "The status, quality, and expansion of the NIH full-length cDNA
RT project: the Mammalian Gene Collection (MGC).";
RL Genome Res. 14:2121-2127(2004).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 180-367.
RC TISSUE=Cerebellum;
RX PubMed=14702039; DOI=10.1038/ng1285;
RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
RA Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
RA Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
RA Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
RA Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
RA Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
RA Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
RA Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
RA Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
RA Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
RA Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
RA Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
RA Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
RA Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
RA Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
RA Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
RA Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
RA Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
RA Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
RA Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
RT "Complete sequencing and characterization of 21,243 full-length human
RT cDNAs.";
RL Nat. Genet. 36:40-45(2004).
CC -!- SIMILARITY: Belongs to the RBM48 family.
CC -!- SIMILARITY: Contains 1 RRM (RNA recognition motif) domain.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAH33561.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
CC Sequence=BAB70806.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
CC Sequence=CAB66554.1; Type=Frameshift; Positions=341;
CC Sequence=CAI45942.1; Type=Erroneous translation; Note=The protein sequence does not correspond to the translation of the nucleic acid sequence;
CC Sequence=EAL24148.1; Type=Erroneous gene model prediction;
CC -----------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution-NoDerivs License
CC -----------------------------------------------------------------------
DR EMBL; AL136619; CAB66554.1; ALT_FRAME; mRNA.
DR EMBL; CR933641; CAI45942.1; ALT_SEQ; mRNA.
DR EMBL; CH471091; EAW76839.1; -; Genomic_DNA.
DR EMBL; CH236949; EAL24148.1; ALT_SEQ; Genomic_DNA.
DR EMBL; BC033561; AAH33561.1; ALT_INIT; mRNA.
DR EMBL; BC044570; AAH44570.1; -; mRNA.
DR EMBL; BC104865; AAI04866.1; -; mRNA.
DR EMBL; BC104867; AAI04868.1; -; mRNA.
DR EMBL; BC143576; AAI43577.1; -; mRNA.
DR EMBL; AK054777; BAB70806.1; ALT_INIT; mRNA.
DR RefSeq; NP_115496.2; NM_032120.2.
DR UniGene; Hs.21590; -.
DR ProteinModelPortal; Q5RL73; -.
DR IntAct; Q5RL73; 48.
DR MINT; MINT-3979239; -.
DR PhosphoSite; Q5RL73; -.
DR DMDM; 74736145; -.
DR PaxDb; Q5RL73; -.
DR PRIDE; Q5RL73; -.
DR Ensembl; ENST00000265732; ENSP00000265732; ENSG00000127993.
DR GeneID; 84060; -.
DR KEGG; hsa:84060; -.
DR UCSC; uc003ulz.3; human.
DR CTD; 84060; -.
DR GeneCards; GC07P092159; -.
DR HGNC; HGNC:21785; RBM48.
DR HPA; HPA021777; -.
DR HPA; HPA025306; -.
DR neXtProt; NX_Q5RL73; -.
DR PharmGKB; PA164717383; -.
DR eggNOG; NOG150976; -.
DR HOGENOM; HOG000082399; -.
DR HOVERGEN; HBG054270; -.
DR InParanoid; Q5RL73; -.
DR ChiTaRS; RBM48; human.
DR GenomeRNAi; 84060; -.
DR NextBio; 73212; -.
DR PRO; PR:Q5RL73; -.
DR ArrayExpress; Q5RL73; -.
DR Bgee; Q5RL73; -.
DR CleanEx; HS_C7orf64; -.
DR Genevestigator; Q5RL73; -.
DR GO; GO:0005634; C:nucleus; IDA:HPA.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR PROSITE; PS50102; RRM; FALSE_NEG.
PE 2: Evidence at transcript level;
KW Complete proteome; Reference proteome; RNA-binding.
FT CHAIN 1 367 RNA-binding protein 48.
FT /FTId=PRO_0000321514.
FT DOMAIN 46 124 RRM.
FT CONFLICT 8 8 L -> P (in Ref. 1; CAB66554).
FT CONFLICT 229 229 R -> K (in Ref. 4; BAB70806).
FT CONFLICT 359 359 H -> R (in Ref. 4; BAB70806).
SQ SEQUENCE 367 AA; 41808 MW; BD42E7ACCDCE9B96 CRC64;
MASSGGELGS LFDHHVQRAV CDTRAKYREG RRPRAVKVYT INLESQYLLI QGVPAVGVMK
ELVERFALYG AIEQYNALDE YPAEDFTEVY LIKFMNLQSA RTAKRKMDEQ SFFGGLLHVC
YAPEFETVEE TRKKLQMRKA YVVKTTENKD HYVTKKKLVT EHKDTEDFRQ DFHSEMSGFC
KAALNTSAGN SNPYLPYSCE LPLCYFSSKC MCSSGGPVDR APDSSKDGRN HHKTMGHYNH
NDSLRKTQIN SLKNSVACPG AQKAITSSEA VDRFMPRTTQ LQERKRRRED DRKLGTFLQT
NPTGNEIMIG PLLPDISKVD MHDDSLNTTA NLIRHKLKEV ISSVPKPPED KPEDVHTSHP
LKQRRRI
//
ID RBM48_HUMAN Reviewed; 367 AA.
AC Q5RL73; B7ZL51; Q5H9T2; Q8IYW7; Q96NS0; Q9H0V7;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
read moreDT 21-DEC-2004, sequence version 1.
DT 22-JAN-2014, entry version 83.
DE RecName: Full=RNA-binding protein 48;
GN Name=RBM48; Synonyms=C7orf64; ORFNames=HSPC304;
OS Homo sapiens (Human).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
OC Catarrhini; Hominidae; Homo.
OX NCBI_TaxID=9606;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Brain, and Endometrial adenocarcinoma;
RX PubMed=11230166; DOI=10.1101/gr.GR1547R;
RA Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S.,
RA Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H.,
RA Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N.,
RA Mewes H.-W., Ottenwaelder B., Obermaier B., Tampe J., Heubner D.,
RA Wambutt R., Korn B., Klein M., Poustka A.;
RT "Towards a catalog of human genes and proteins: sequencing and
RT analysis of 500 novel complete protein coding human cDNAs.";
RL Genome Res. 11:422-435(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
RA Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
RA Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
RA Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
RA Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
RA Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
RA Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
RA Venter J.C.;
RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Brain, Lung, and Testis;
RX PubMed=15489334; DOI=10.1101/gr.2596504;
RG The MGC Project Team;
RT "The status, quality, and expansion of the NIH full-length cDNA
RT project: the Mammalian Gene Collection (MGC).";
RL Genome Res. 14:2121-2127(2004).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 180-367.
RC TISSUE=Cerebellum;
RX PubMed=14702039; DOI=10.1038/ng1285;
RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
RA Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
RA Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
RA Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
RA Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
RA Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
RA Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
RA Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
RA Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
RA Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
RA Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
RA Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
RA Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
RA Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
RA Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
RA Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
RA Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
RA Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
RA Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
RA Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
RT "Complete sequencing and characterization of 21,243 full-length human
RT cDNAs.";
RL Nat. Genet. 36:40-45(2004).
CC -!- SIMILARITY: Belongs to the RBM48 family.
CC -!- SIMILARITY: Contains 1 RRM (RNA recognition motif) domain.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAH33561.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
CC Sequence=BAB70806.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
CC Sequence=CAB66554.1; Type=Frameshift; Positions=341;
CC Sequence=CAI45942.1; Type=Erroneous translation; Note=The protein sequence does not correspond to the translation of the nucleic acid sequence;
CC Sequence=EAL24148.1; Type=Erroneous gene model prediction;
CC -----------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution-NoDerivs License
CC -----------------------------------------------------------------------
DR EMBL; AL136619; CAB66554.1; ALT_FRAME; mRNA.
DR EMBL; CR933641; CAI45942.1; ALT_SEQ; mRNA.
DR EMBL; CH471091; EAW76839.1; -; Genomic_DNA.
DR EMBL; CH236949; EAL24148.1; ALT_SEQ; Genomic_DNA.
DR EMBL; BC033561; AAH33561.1; ALT_INIT; mRNA.
DR EMBL; BC044570; AAH44570.1; -; mRNA.
DR EMBL; BC104865; AAI04866.1; -; mRNA.
DR EMBL; BC104867; AAI04868.1; -; mRNA.
DR EMBL; BC143576; AAI43577.1; -; mRNA.
DR EMBL; AK054777; BAB70806.1; ALT_INIT; mRNA.
DR RefSeq; NP_115496.2; NM_032120.2.
DR UniGene; Hs.21590; -.
DR ProteinModelPortal; Q5RL73; -.
DR IntAct; Q5RL73; 48.
DR MINT; MINT-3979239; -.
DR PhosphoSite; Q5RL73; -.
DR DMDM; 74736145; -.
DR PaxDb; Q5RL73; -.
DR PRIDE; Q5RL73; -.
DR Ensembl; ENST00000265732; ENSP00000265732; ENSG00000127993.
DR GeneID; 84060; -.
DR KEGG; hsa:84060; -.
DR UCSC; uc003ulz.3; human.
DR CTD; 84060; -.
DR GeneCards; GC07P092159; -.
DR HGNC; HGNC:21785; RBM48.
DR HPA; HPA021777; -.
DR HPA; HPA025306; -.
DR neXtProt; NX_Q5RL73; -.
DR PharmGKB; PA164717383; -.
DR eggNOG; NOG150976; -.
DR HOGENOM; HOG000082399; -.
DR HOVERGEN; HBG054270; -.
DR InParanoid; Q5RL73; -.
DR ChiTaRS; RBM48; human.
DR GenomeRNAi; 84060; -.
DR NextBio; 73212; -.
DR PRO; PR:Q5RL73; -.
DR ArrayExpress; Q5RL73; -.
DR Bgee; Q5RL73; -.
DR CleanEx; HS_C7orf64; -.
DR Genevestigator; Q5RL73; -.
DR GO; GO:0005634; C:nucleus; IDA:HPA.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR PROSITE; PS50102; RRM; FALSE_NEG.
PE 2: Evidence at transcript level;
KW Complete proteome; Reference proteome; RNA-binding.
FT CHAIN 1 367 RNA-binding protein 48.
FT /FTId=PRO_0000321514.
FT DOMAIN 46 124 RRM.
FT CONFLICT 8 8 L -> P (in Ref. 1; CAB66554).
FT CONFLICT 229 229 R -> K (in Ref. 4; BAB70806).
FT CONFLICT 359 359 H -> R (in Ref. 4; BAB70806).
SQ SEQUENCE 367 AA; 41808 MW; BD42E7ACCDCE9B96 CRC64;
MASSGGELGS LFDHHVQRAV CDTRAKYREG RRPRAVKVYT INLESQYLLI QGVPAVGVMK
ELVERFALYG AIEQYNALDE YPAEDFTEVY LIKFMNLQSA RTAKRKMDEQ SFFGGLLHVC
YAPEFETVEE TRKKLQMRKA YVVKTTENKD HYVTKKKLVT EHKDTEDFRQ DFHSEMSGFC
KAALNTSAGN SNPYLPYSCE LPLCYFSSKC MCSSGGPVDR APDSSKDGRN HHKTMGHYNH
NDSLRKTQIN SLKNSVACPG AQKAITSSEA VDRFMPRTTQ LQERKRRRED DRKLGTFLQT
NPTGNEIMIG PLLPDISKVD MHDDSLNTTA NLIRHKLKEV ISSVPKPPED KPEDVHTSHP
LKQRRRI
//